When it comes to hand-to-hand combat the two of them are pretty much equal. They were both trained to be killing machines, Wolverine through the Weapon X program and Bobba Fett was raised to be the perfect bounty hunter.
Part of being the best bounty hunter means that you are armed for everything. And I’m sure that Bobba Fett is. From the Mandalorian body armor that covers from head to toe, to the never-ending supply of blaster weapons, he has it all. And he’s going to need to use them a lot to slow down Wolverine. The mutant does have his admantium claws, so it’s definitely a good thing he is wearing armor.
But what protects Wolverine so much–literally–is his healing factor. Combine the fact that you can’t really hurt him, with his heightened senses and agility you can’t hit him. The only way that Bobba Fett can win this is by using his spaceship Slave I’s weaponry to fire at Wolverine, but that’s not too practical a way to fight.
So how would this end? Poor Bobba Fett would be looking for Wolverine, only to hear a “SNIKT!” and before he knows it, would be inflicted with a massive stab wound to the mid section. That would be followed by Wolvie lighting a cigar with one of Bobba’s blasters.